When shrewd and confident FBI Special Agent Audrey Parker arrives in the small town of Haven she soon finds herself caught up with the return of The Troubles, a plague of supernatural afflictions that occurred in the town at least once before. If that was not enough to draw her in, she also finds a link that may lead her to the mother she has never known.
Audrey remains in Haven to investigate her mother's connection to the Colorado Kid, but ends up working with Nathan to determine the cause of a mysterious series of incidents that involve butterflies and otherworldly phenomena centered on a angry reverend, his passive daughter, and her foster son.
FBI agent Audrey Parker travels to the town of Haven to investigate the death of an escaped prisoner who fled to his hometown. She soon discovers the man's death is merely the tip of a very large iceberg of supernatural phenomena.
Young men in Haven start aging at an accelerated rate, and Audrey and Nathan attempt to find the source.
A series of fatal animal attacks lead Audrey and Nathan to investigate a local woman who supports animal rights. However, they soon discover that while she may not be Troubled, the person responsible is... and Chief Wournos is the next target.
A plague of insanity strikes at a local hospital, causing the doctors to go insane... and the patients to become normal. Audrey and Nathan seek to discover the cause before it spreads further.
Haven is stricken by a mysterious plague when animals and plants alike are destroyed by exposure to hydrochloric acid with no discernible source.
Dwight and Charlotte work to clear Nathan's name when the citizens of Haven put the lawman on trial. Hoping to buy them time, the brothers Teagues moderate the courtroom proceedings, while Audrey continues her quest to solve the darkness troubles.
Desperate conditions in Haven lead to a terrified population that's difficult for Dwight to maintain control over; at the same time, Nathan assembles a task force to restore power to the town; and Audrey tries to put an end to the trouble once and for all.
Two mysterious assaults involve crooked businessmen, and sketching charcoal is found at each crime scene. However, the boy the officers suspect is responsible becomes a third victim, leaving them to pursue a new line of investigation.
Dwight struggles to maintain order when Duke's trouble wreaks havoc around town; at the same time, Audrey and Charlotte work together to drive away a mysterious fog that has everyone trapped in Haven.
Naked savages wander the streets of Haven. While Nathan and Audrey try to determine who they are and where they've come from, Duke convinces the Teagues to let him see the old newspapers and determine who the mysterious "Hunter" is and how he's connected to Audrey.
Nathan and Audrey investigate a series of murders, but the prime suspect insists that she's trying to stop the real killer. Meanwhile, in the aftermath of Duke's revelation, Audrey continues to investigate the Colorado Kid mystery involving her mother.
Nathan encounters an old adversary after entering the terrible Void; Audrey and Duke deal with the threat of a newly troubled person who wants revenge; at the same time, Dwight tries to help Vince free Dave from Croatoan's grip.
Duke struggles to accept Jennifer's death; Nathan searches for some shred of Audrey in Mara's cruel personality; Dwight shoulders the heavy burden of holding Haven together.
Audrey, Nathan and Duke's victory over William feels hollow as they deal with the aftermath of Duke on death's door, Mara in control of Audrey's body, and a strange trouble supernaturally silencing citizens all over town.
Charlotte and Audrey work on their new plan to eliminate the troubles, but something seems to be thwarting their attempts, and it's up to Nathan and Dwight to get to the bottom of it. Meanwhile, the Teagues brothers search for the mysterious serial killer who's stalking the streets of Haven.
A banker hides a dark secret that connects him to a killer hiding in Haven. Meanwhile, Duke helps a young runaway and Nathan discovers that his job is at risk.
The Seekers follow a monster to Haven; their presence threatens to reveal the town's troubles to the entire world.
A mysterious Haven resident may prove the key to helping Nathan and Audrey stop an outbreak of electrocutions. Meanwhile, Duke reluctantly accepts his ex-wife's help finding a way to protect himself from the tattooed man.
Audrey and Nathan investigate a series of strange incidents where the only common factor is a missing woman. Meanwhile, Duke insists on tailing along on the officers' investigation, while the Teagues do some digging on Tommy's background.
Dwight and Charlotte work on a way to free Audrey from the Sandman's stasis before he can trap her in his mind forever; at the same time, Duke tries to help Darkside Seeker Seth Byrne recover his memories of Haven.
Audrey and Nathan learn of a ghost story that wanders the Haven clinic and takes the lives of sick people before their time.
Nathan makes a desperate play to protect Mara from the furious citizens of Haven, leaving Dwight and Duke to deal with a deadly trouble that threatens to burn the town to the ground.
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