The story is set at Shiomi Academy, a vast, prestigious academy with a Daitoshokan (literally, "great library") that rivals Japan's national library. As a member of the Library Club, Kyoutarou Kakei goes to Daitoshokan to enjoy reading by himself. He then meets a second-year girl named Tsugumi Shirasaki through the efforts of a so-called "shepherd" who fulfills people's wishes. Eventually, more girls join the club thanks to the "shepherd."
It's finally the day of Minafes and the symposium. Which will get more people? Will Kakei be able to save Shirasaki?
More is revealed about Kakei and Kodachi's past, and Kakei meets Shirasaki's little sister while Kodachi causes trouble.
Kakei spends his days peacefully reading as part of the library club at Shiomi Academy until one day, when he gets an email from the Shepherd...
The Happy Project's Minafes goes head to head with the student council as Kakei makes his decision about being a Shepherd.
The girls of the Library Club invite Kakei out on a group date, but Kodachi has Shepherd work for him even on his day off.
Kakei finally pays a visit to the magic library from his visions and learns more about the secrets of the Shepherds.
Suzuki writes a play for the Library Club to perform, but will circumstances force her to confront her true self...?
Kakei and the others start their Shiomi Happy Project activities by picking up trash and find a beautiful tuning fork...
The Library Club starts getting more jobs, but this spike in popularity has its drawbacks... Meanwhile, Kakei zeroes in on the Shepherd's identity.
The Library Club members don costumes to advertise Appllio's Spring Fair and then take a trip to the bathhouse to get to know each other better…
As the Library Club prepares for the festival, Misono thinks back on her life of singing and decides what she wants for the future.
Kakei and Suzuki get help from the genius of the cafeteria while Shirasaki and the others pay the Song Princess a visit…
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