#1 - The Recluse in the Recliner 8.48
Season 9 - Episode 24
The team investigates the death of a man who had offered Booth information on a possible government cover-up related to a previous case, but was killed before their meeting took place. As Booth and the Jeffersonian team dig deeper into the burgeoning conspiracy surrounding the man’s death, it’s evident Booth may be in over his head, and his future with the FBI is put in question.
#2 - The Change in the Game 8.43
Season 6 - Episode 23
In the 6th season finale, the team investigates the disturbing, unidentifiable remains of a bowler that were found jammed in one of the bowling alley's automatic pinsetters. After hitting a dead end in the case, Booth and Brennan decide to go undercover and join a competitive bowling team in search of answers.
#3 - The Past in the Present 8.40
Season 7 - Episode 13
Evil tech genius Christopher Pelant, a suspect in a previous case Brennan and Booth handled, is back in court on appeal. Knowing what he is capable of, Brennan and Booth inform the judge that he is a suspect in two murder cases. Then, Brennan and Booth are called to the scene of a new murder. After determining the victim is Brennan's friend, who also is linked to Pelant, the Jeffersonian team works to prove he is guilty once and for all. But when law enforcement examines the team's findings, key pieces of evidence are tied to Brennan and suspicion falls on her.
#4 - The Pain in the Heart 8.36
Season 3 - Episode 15
The Gormogon serial killer is back again, and the silver skeleton from the basement vault has gone missing. All the Jeffersonian employees become suspects, with the scary possibility that one of their own is working with Gormogon.
#5 - Aliens in a Spaceship 8.33
Season 2 - Episode 9
The bodies of twin boys, kidnapped five years earlier, are discovered. The investigation lead Booth and Brennan to a notorious kidnapper known as the Grave Digger. During the investigation, Brennan and Hodgins become the Grave Digger's next victims.
#6 - The Corpse on the Canopy 8.33
Season 8 - Episode 12
After Hodgins and Angela are drugged and wake up to a bloody corpse hanging in the canopy of their bed and flower petals around their son Michael's crib, they are forced to believe that Pelant is back for revenge against Hodgins. Although Hodgins wants to go after Pelant directly, Booth knows it's best to work within the system and not go against protocol. Meanwhile, as the Jeffersonian team investigates the corpse, they discover the victim was a Special Forces agent working for the world's biggest supplier of mercenaries, and Angela and Hodgins decide to start an investigation without the rest of the Jeffersonian team for the sake of their family.
#7 - The Hole in the Heart 8.31
Season 6 - Episode 22
Rogue sniper Jacob Broadsky returns once again, claiming another victim and making Booth determined to put him away once and for all.
#8 - The Pathos in the Pathogens 8.30
Season 8 - Episode 23
The Jeffersonian team rushes to prevent a viral outbreak while investigating the murder of journalist Mia Garrett after her infected body is found at a biohazard facility. When the mutated virus that killed Mia infects Jeffersonian intern Arastoo Vaziri, their only chance of saving him is by solving the murder. Tension and passion build as the team races against the clock to find the killer - and the cure.
#9 - The Woman in White 8.29
Season 9 - Episode 6
The Jeffersonian team investigates the murder of Nancy Handelman, whose body was discovered at the time of Brennan and Booth's wedding rehearsal. When the case becomes more serious than the team anticipated, Cam and Angela do everything in their power to keep the details of the investigation from Brennan in order to ensure that she will stay focused on her big day. Tensions run high when unfortunate events occur to stall the wedding temporarily, and Max comes to town with a suspicious duffle bag full of money.
#10 - The Signs in the Silence 8.26
Season 6 - Episode 21
A mysterious young deaf girl is thought to have committed a recent murder after she's found on the streets, covered in blood and holding a knife. It's up to the Jeffersonian team to figure out who this girl is and determine if she's really the one to blame for the murder.
#11 - The Wannabe in the Weeds 8.24
Season 3 - Episode 14
A wannabe singer Tommy Sour was found on a grassy location. The investigation leads Brennan, Booth, and Cam to the Checker Box Restaurant where Tommy used to sing. There are several suspects who took part in the open mike contest there, with talent scouts in the audience. The group comes together with a startling revelation for Brennan.
#12 - The Crack in the Code 8.23
Season 7 - Episode 6
A cryptic message penned in human blood is discovered at a national monument. As the Jeffersonian team embarks on a scavenger hunt to solve the case, they realize their tech-savvy suspect remains one step ahead of them. Meanwhile, Booth and Brennan search for the perfect home for their new family.
#13 - The Hot Dog in the Competition 8.22
Season 7 - Episode 2
The Jeffersonian team identifies the remains of a competitive-eating champion, just days before the start of the Gluttony Games, a premiere eating competition with a $10,000 prize at stake. The remarkable work of new squint - and former juvenile delinquent - Finn links obscure evidence found in the belly of a snake with laws of physics that helps solve the crime. Despite his brilliance in the lab, Finn is met with hostility and skepticism, leading Cam to question her decision to give him a chance to start anew. Meanwhile, Booth is caught off-guard by an announcement Brennan makes about their baby. To diffuse the tension between them, the couple agrees to experiment by putting themselves in each other's shoes.
#14 - The Future in the Past 8.20
Season 8 - Episode 1
Having been accused of murder, Brennan is on the run from the FBI, with help from her father Max. Booth and the Jeffersonian team are convinced evil tech genius Christopher Pelant has manipulated key evidence in the case to pinpoint Brennan as the prime suspect. Then, an anonymous tip leads the team to the remains of a high school guidance counselor that may hold the key to proving Brennan's innocence.
#15 - The Patriot in Purgatory 8.18
Season 8 - Episode 6
While investigating the remains of bodies that have been deemed unidentifiable, five “squinterns” uncover the identity of a man who died as a result of the 9/11 terrorist attacks, propelling the Jeffersonian team to determine if he was a perpetrator or a victim.
#16 - The Prisoner in the Pipe 8.17
Season 7 - Episode 7
The remains of an escaped convict are found in a residential sewer, but an examination of the sewer pipes indicates that the murder occurred within prison walls. Brennan insists on solving the crime - despite Booth's pleas for her not to overexert herself - and the expectant couple experiences a very untraditional arrival of their baby daughter.
#17 - The Male in the Mail 8.16
Season 7 - Episode 4
Dismembered remains are discovered in several mailing boxes at a dead letter office, and the Jeffersonian team identifies the victim as an employee of a local Ship 'n' Print, where the staff recently split the winnings of a lottery prize. The team uncovers a complicated love triangle between two married employees and the victim, and while motive points to the husband a critical clue leads them to solve the crime definitively.
#18 - The Blackout in the Blizzard 8.15
Season 6 - Episode 16
When a blizzard causes a power outage during a critical murder investigation, the team finds they must adapt to their low-tech environment in order to prevent a possible biological catastrophe. Elsewhere, Sweets gets a little too interpersonal when Brennan and Booth find themselves trapped in an elevator, while Angela and Hodgins worry over some test results.
#19 - The Don't in the Do 8.15
Season 7 - Episode 9
When a corpse is found at a landfill, dyed in a blue substance, intern Arastoo Vaziri discovers a method that helps eliminate postmortem damages to the corpse, which leads the team back to a hair salon where the victim worked. Meanwhile Bones is feeling uncomfortable in her post-baby body, so Booth decides to do something special to boost her self-confidence.
#20 - The Woman in Limbo 8.15
Season 1 - Episode 22
Brennan receives some bones to identify, but is stunned when she discovers that the remains are those of her mother who disappeared when she was 15 years old. The determined date of her mother's death leaves Bones confused and angry.
#21 - The Hero in the Hold 8.15
Season 4 - Episode 14
While trapped and trying to escape from a ship in the middle of the ocean, Booth is haunted by strange hallucinations.
#22 - The Doctor in the Photo 8.15
Season 6 - Episode 9
Brennan gets a glimpse into her own life when the body of a brilliant and career-driven surgeon is found in a rough neighborhood with multiple fractures in her skull and no indication as to how or why she was there. While the team investigates the case objectively, Brennan struggles to separate her own life from the victim’s as she perceives many parallels between them the more she learns about the victim’s past. Meanwhile, evidence found at the crime scene brings the team closer to solving the case, but it’s Brennan’s unique perspective that propels her to retrace the final events of the victim’s life. With the reassurance of a new friend and Jeffersonian security guard, Micah Leggat, Brennan makes a discovery about herself and learns a lesson about taking chances.
#23 - The Finder 8.12
Season 6 - Episode 19
The remains of a maritime museum security guard are found in the Florida Everglades after an attempt to steal an obsolete 17th century nautical chart fragment used to find treasures. In order to solve the crime, Booth seeks out Walter Sherman, a former Iraqi soldier with an uncanny gift to unearth anyone and anything. With Sherman's help, as well as that of his colleague, Ike Latulippe, and his legal advisor, Leo Knox, the team is led to tattoo artist who points them in the direction of a tough young woman. But when the woman is found murdered with remnants of the map lodged in her remains, the team discovers centuries of history linked to the map and the suspect behind the crimes. Meanwhile, Brennan puts Sherman's remarkable skill to the test, and Booth harbors cold feelings toward his former military comrade.
#24 - The Critic in the Cabernet 8.11
Season 4 - Episode 25
The team is on the case when human remains are found inside a barrel of wine during a wine tasting. When the victim turns out to be a wine critic whose scathing reviews were capable of sending a vineyard to its ruin, everyone from the winery's owner to the victim's own wife becomes a suspect.
#25 - The Parts in the Sum of the Whole 8.11
Season 5 - Episode 16
In the 100th episode, Booth and Brennan tell Sweets about a mistake in his book. Sweets is shocked to learn of this mistake, and asks Booth and Brennan to reveal the truth. They agree, and flash back to the first time they worked on a case together. The formation and evolution of their relationship, as well as the relationships of the other Jeffersonian workers, is examined.